The average program manager salary at Fresno was $89,215 , which is 47 percent lower than the average salary for this job in California, but 11 percent higher than the national average for this job . Program Manager salaries at Fresno typically range from $75,373 to $108,567 (25th to 75th percentile). The highest reported program manager salary was $134,372. There are 15 employees at Fresno with the job title program manager.