Payroll Clerk salary at San Francisco

The average payroll clerk salary at San Francisco was $85,194 , which is 14 percent lower than the average salary for this job in California, but 72 percent higher than the national average for this job . Payroll Clerk salaries at San Francisco typically range from $78,095 to $100,443 (25th to 75th percentile). The highest reported payroll clerk salary was $110,817. There are 58 employees at San Francisco with the job title payroll clerk.