Highest City Of Batavia employee salary in year 2018 was $119,102. City Of Batavia employees number in year 2018 was 153. City Of Batavia average salary was $56,384 and median salary was $59,638. According to the last payroll, City Of Batavia average salary is 25 percent lower than USA average and 14 percent lower than New York state average. City Of Batavia employee salaries are usually between $38,221 and $74,202. Top 10% of highest-earning employees have salaries ranging from $87,932 to $119,102. From 2017 to 2018, the median salary increased 0.2 percent.