The average SUNY programmer salary was $108,323, which is 89 percent higher than the average salary for this job in New York, and 51 percent higher then the average salary for this job nationwide. Programmer salary in SUNY is usually between $105,705 and $110,941 (25th and 75th). The highest programmer salary in SUNY was $110,941. There are 2 employees in SUNY whose job title is programmer.