Payroll Clerk salary at San Francisco

The average payroll clerk salary at San Francisco was $116,139 , which is 9 percent higher than the average salary for this job in California, and 61 percent higher than the national average for this job . Payroll Clerk salaries at San Francisco typically range from $74,362 to $146,538 (25th to 75th percentile). The highest reported payroll clerk salary was $172,525. There are 20 employees at San Francisco with the job title payroll clerk.